更新于：2024-05-01

SMARCD1

SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1

更新于：2024-05-01

基本信息

别名

60 kDa BRG-1/Brm-associated factor subunit A、BAF60A、BRG1-associated factor 60A

+ [6]

简介

Involved in transcriptional activation and repression of select genes by chromatin remodeling (alteration of DNA-nucleosome topology). Component of SWI/SNF chromatin remodeling complexes that carry out key enzymatic activities, changing chromatin structure by altering DNA-histone contacts within a nucleosome in an ATP-dependent manner (PubMed:8804307, PubMed:29374058). Belongs to the neural progenitors-specific chromatin remodeling complex (npBAF complex) and the neuron-specific chromatin remodeling complex (nBAF complex). During neural development a switch from a stem/progenitor to a postmitotic chromatin remodeling mechanism occurs as neurons exit the cell cycle and become committed to their adult state. The transition from proliferating neural stem/progenitor cells to postmitotic neurons requires a switch in subunit composition of the npBAF and nBAF complexes. As neural progenitors exit mitosis and differentiate into neurons, npBAF complexes which contain ACTL6A/BAF53A and PHF10/BAF45A, are exchanged for homologous alternative ACTL6B/BAF53B and DPF1/BAF45B or DPF3/BAF45C subunits in neuron-specific complexes (nBAF). The npBAF complex is essential for the self-renewal/proliferative capacity of the multipotent neural stem cells. The nBAF complex along with CREST plays a role regulating the activity of genes essential for dendrite growth (By similarity). Has a strong influence on vitamin D-mediated transcriptional activity from an enhancer vitamin D receptor element (VDRE). May be a link between mammalian SWI-SNF-like chromatin remodeling complexes and the vitamin D receptor (VDR) heterodimer (PubMed:14698202). Mediates critical interactions between nuclear receptors and the BRG1/SMARCA4 chromatin-remodeling complex for transactivation (PubMed:12917342). Interacts with AKIRIN2 (By similarity).

关联

100 项与 SMARCD1 相关的临床结果

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100 项与 SMARCD1 相关的转化医学

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0 项与 SMARCD1 相关的专利（医药）

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117

项与 SMARCD1 相关的文献（医药）

2024-02-01·Clinical and translational medicine

Pan-cancer analyses of bromodomain containing 9 as a novel therapeutic target reveals its diagnostic, prognostic potential and biological mechanism in human tumours.

Article

作者: Yu Chen ; Zitong Gao ; Isam Mohd-Ibrahim ; Hua Yang ; Lang Wu ; Yuanyuan Fu ; Youping Deng

BACKGROUND:

Mutations in one or more genes responsible for encoding subunits within the SWItch/Sucrose Non-Fermentable (SWI/SNF) chromatin-remodelling complexes are found in approximately 25% of cancer patients. Bromodomain containing 9 (BRD9) is a more recently identified protein coding gene, which can encode SWI/SNF chromatin-remodelling complexes subunits. Although initial evaluations of the potential of BRD9-based targeted therapy have been explored in the clinical application of a small number of cancer types, more detailed study of the diagnostic and prognostic potential, as well as the detailed biological mechanism of BRD9 remains unreported.

METHODS:

We used various bioinformatics tools to generate a comprehensive, pan-cancer analyses of BRD9 expression in multiple disease types described in The Cancer Genome Atlas (TCGA). Experimental validation was conducted in tissue microarrays and cell lines derived from lung and colon cancers.

RESULTS:

Our study revealed that BRD9 exhibited elevated expression in a wide range of tumours. Analysis of survival data and DNA methylation for BRD9 indicated distinct conclusions for multiple tumours. mRNA splicing and molecular binding were involved in the functional mechanism of BRD9. BRD9 may affect cancer progression through different phosphorylation sites or N⁶ -methyladenosine site modifications. BRD9 could potentially serve as a novel biomarker for diagnosing different cancer types, especially could accurately forecast the prognosis of melanoma patients receiving anti-programmed cell death 1 immunotherapy. BRD9 has the potential to serve as a therapeutic target, when pairing with etoposide in patients with melanoma. The BRD9/SMARCD1 axis exhibited promising discriminative performance in forecasting the prognosis of patients afflicted with liver hepatocellular carcinoma (LIHC) and mesothelioma. Additionally, this axis appears to potentially influence the immune response in LIHC by regulating the programmed death-ligand 1 immune checkpoint. For experimental validation, high expression levels of BRD9 were observed in tumour tissue samples from both lung and colon cancer patients. Knocking down BRD9 led to the inhibition of lung and colon cancer development, likely via the Wnt/β-catenin signalling pathway.

CONCLUSIONS:

These pan-cancer study revealed the diagnostic and prognostic potential, along with the biological mechanism of BRD9 as a novel therapeutic target in human tumours.

2023-12-20·European journal of human genetics : EJHG

De novo variants underlying monogenic syndromes with intellectual disability in a neurodevelopmental cohort from India.

Article

作者: Shruti Pande ; Purvi Majethia ; Karthik Nair ; Lakshmi Priya Rao ; Selinda Mascarenhas ; Namanpreet Kaur ; Michelle C do Rosario ; Kausthubham Neethukrishna ; Ankur Chaurasia ; Bhagesh Hunakunti ; Nalesh Jadhav ; Sruthy Xavier ; Jeevan Kumar ; Vivekananda Bhat ; Gandham SriLakshmi Bhavani ; Dhanya Lakshmi Narayanan ; B L Yatheesha ; Siddaramappa J Patil ; Sheela Nampoothiri ; Nutan Kamath ; Shrikiran Aroor ; Ramesh Bhat Y ; Leslie E Lewis ; Suvasini Sharma ; Shruti Bajaj ; Naveen Sankhyan ; Shahyan Siddiqui ; Shalini S Nayak ; Stephanie Bielas ; Katta Mohan Girisha ; Anju Shukla

The contribution of de novo variants as a cause of intellectual disability (ID) is well established in several cohorts reported from the developed world. However, the genetic landscape as well as the appropriate testing strategies for identification of de novo variants of these disorders remain largely unknown in low-and middle-income countries like India. In this study, we delineate the clinical and genotypic spectrum of 54 families (55 individuals) with syndromic ID harboring rare de novo variants. We also emphasize on the effectiveness of singleton exome sequencing as a valuable tool for diagnosing these disorders in resource limited settings. Overall, 46 distinct disorders were identified encompassing 46 genes with 51 single-nucleotide variants and/or indels and two copy-number variants. Pathogenic variants were identified in CREBBP, TSC2, KMT2D, MECP2, IDS, NIPBL, NSD1, RIT1, SOX10, BRWD3, FOXG1, BCL11A, KDM6B, KDM5C, SETD5, QRICH1, DCX, SMARCD1, ASXL1, ASXL3, AKT3, FBN2, TCF12, WASF1, BRAF, SMARCA4, SMARCA2, TUBG1, KMT2A, CTNNB1, DLG4, MEIS2, GATAD2B, FBXW7, ANKRD11, ARID1B, DYNC1H1, HIVEP2, NEXMIF, ZBTB18, SETD1B, DYRK1A, SRCAP, CASK, L1CAM, and KRAS. Twenty-four of these monogenic disorders have not been previously reported in the Indian population. Notably, 39 out of 53 (74%) disease-causing variants are novel. These variants were identified in the genes mainly encoding transcriptional and chromatin regulators, serine threonine kinases, lysosomal enzymes, molecular motors, synaptic proteins, neuronal migration machinery, adhesion molecules, structural proteins and signaling molecules.

2023-09-26·Cell reports

Myeloid BAF60a deficiency alters metabolic homeostasis and exacerbates atherosclerosis.

Article

作者: Yang Zhao ; Yuhao Liu ; Guizhen Zhao ; Haocheng Lu ; Yaozhong Liu ; Chao Xue ; Ziyi Chang ; Hongyu Liu ; Yongjie Deng ; Wenying Liang ; Huilun Wang ; Oren Rom ; Minerva T Garcia-Barrio ; Tianqing Zhu ; Yanhong Guo ; Lin Chang ; Jiandie Lin ; Y Eugene Chen ; Jifeng Zhang

Atherosclerosis, a leading health concern, stems from the dynamic involvement of immune cells in vascular plaques. Despite its significance, the interplay between chromatin remodeling and transcriptional regulation in plaque macrophages is understudied. We discovered the reduced expression of Baf60a, a component of the switch/sucrose non-fermentable (SWI/SNF) chromatin remodeling complex, in macrophages from advanced plaques. Myeloid-specific Baf60a deletion compromised mitochondrial integrity and heightened adhesion, apoptosis, and plaque development. BAF60a preserves mitochondrial energy homeostasis under pro-atherogenic stimuli by retaining nuclear respiratory factor 1 (NRF1) accessibility at critical genes. Overexpression of BAF60a rescued mitochondrial dysfunction in an NRF1-dependent manner. This study illuminates the BAF60a-NRF1 axis as a mitochondrial function modulator in atherosclerosis, proposing the rejuvenation of perturbed chromatin remodeling machinery as a potential therapeutic target.

项与 SMARCD1 相关的新闻（医药）

2022-10-22

·生物制药小编

肿瘤靶向治疗新靶点：MUC1

MUC1是一种高度糖化的跨膜粘蛋白，位于上皮细胞的管腔表面，保护它们免受极端因素的影响。在癌细胞中，MUC1表达上调，蛋白质结构、糖基化水平和空间分布发生改变。上调的MUC1参与了多种信号通路的调节，并在肿瘤细胞代谢、细胞凋亡、上皮间质转化和转移中发挥重要作用。MUC1糖基化不足导致新的抗原表位的暴露，这些表位可作为治疗和诊断的特异性靶点。目前，基于MUC1的靶向药物包括单抗、ADC、适配子和肿瘤疫苗，其中一些已经进入临床试验。本文就MUC1结构、表达、在肿瘤生物学功能中的作用以及针对MUC1的治疗药物做一个简单介绍。MUC1结构与表达MUC1基因位于染色体1q22上，由7个外显子和6个内含子组成，编码MUCIN家族中的I型跨膜蛋白。通过选择性剪接，MUC1可以形成多种异构体，目前已鉴定出70多种，主要包括MUC1/A、MUC1/B、MUC1/C、MUC1/D、MUC1/X、MUC1/Y等 (图1)。在正常细胞中，MUC1以极性分布分布在上皮细胞的管腔表面，而在肿瘤细胞中，MUC1的分布失去了其极性。图1. MUC1异构体示意图MUC1合成后，由于空间应力作用，被水解成两个多肽片段：MUC1-C和MUC1-N，其通过共价键相连。MUC1-C包括胞外区(MUC1-C/ED)、跨膜区(MUC1-C/TMD)和胞内区(MUC1-C/CD)。MUC1-C/ED是EGFR和其他受体激酶的识别位点。MUC1-C/TMD帮助MUC1锚定在细胞膜上，并将信息从细胞外传递到细胞内。MUC1-C/CD具有多个磷酸化位点和胞内蛋白结合位点，在细胞信号转导中发挥重要作用。MUC1-N包含多个可变数目的串联重复序列(PDTRPAPGSTAP PAHGVTSA)(VNTR)。VNTR形成的多肽骨架为糖基化提供了支架。肽骨架含有一个富含Pro(P)、Thr(T)和Ser(S)的PTS区域，糖链主要通过O-糖苷键与肽骨架上的Ser/Thr相连。在正常细胞中，糖基化隐藏了免疫优势多肽表位，而癌细胞中异常的MUC1糖基化导致免疫优势多肽表位暴露。此外，在肿瘤细胞中，MUC1-N/MUC1-C复合体的破坏导致MUC1-N的脱落和MUC1-C的激活。血液中的游离MUC1-N可以中和MUC1治疗性抗体，使它们无效。MUC1在多种肿瘤中高度表达，包括乳腺癌、膀胱癌、胰腺癌和卵巢癌，并与预后不良有关。MUC1在正常组织和肿瘤中扮演着完全不同的角色。在正常组织中，正常糖基化的MUC1在上皮细胞表面形成一种保护性屏障，保护它们免受极端环境的影响。在癌细胞中，MUC1异常高表达，异常糖基化改变了细胞内的定位，通过许多信号通路参与多种细胞活动的调节。MUC1在肿瘤细胞中的作用MUC1与癌细胞代谢新陈代谢的转化已成为癌细胞的特征之一。癌细胞对新陈代谢进行重新编程，以维持其能量需求并适应恶劣的肿瘤微环境，同时为强劲的增殖创造条件。MUC1在肿瘤代谢重编程中起重要作用，包括葡萄糖代谢、脂肪代谢、核苷酸代谢、嘧啶代谢和谷氨酰胺代谢(图2)。图2. MUC1在肿瘤代谢重编程中的作用MUC1通过调节HIF-1a的表达帮助肿瘤细胞在低氧条件下存活和增殖。研究发现，MUC1通过调节HIF-1a调节癌细胞的代谢重编程，增加癌细胞中葡萄糖的摄取和有氧糖酵解，导致肿瘤进展。在子宫内膜癌中，AGR2通过MUC1/HIF-1a途径诱导糖酵解关键基因(LDHA、PGK1、HK2和ENO1)的表达，增加细胞对葡萄糖的摄取和乳酸的产生，从而促进肿瘤进展。此外，MUC1增强TIGAR的表达，从而促进糖酵解中间产物分流到戊糖磷酸途径。代谢旁路碳流的增加促进了肿瘤细胞的合成代谢。脂代谢紊乱也是癌症最显著的代谢变化之一。癌细胞利用脂类代谢获得能量，促进合成代谢，增加恶性表型。MUC-1通过上调胆固醇和脂肪代谢酶相关基因的转录使得tamoxifen耐药。MUC1介导的EMT与转移上皮肿瘤的癌细胞需要一系列过程才能实现远处转移。从上皮细胞到间充质细胞第一次转化的特征是上皮细胞标志物减少，间充质细胞特征增加。这一过程的完成使得细胞脱离邻近细胞的紧密连接，为进入循环做准备。MUC1通过多条途径促进EMT(图3)。图3. MUC1通过多条途径促进EMT癌细胞在趋化因子的诱导下接近血管或淋巴，并黏附于内皮细胞，然后通过内皮细胞间隙进入循环。在血液循环中，癌细胞需要克服氧化作用才能生存。在乳腺癌中，MUC1通过JAK/STAT信号与STAT1相互作用，刺激干扰素诱导的跨膜蛋白1(IFITM1)转录，进而促进乳腺癌细胞中的EMT。在三阴性乳腺癌中，MUC1-C激活STAT3，与pSTAT3形成复合体，驱动Twist1基因的表达，进而与Twist1直接形成复合体，不仅促进MUC1-C的表达，还在EMT过程中促进EMT转化转录因子(EMT-TF)的表达和多基因表达。此外，MUC1-C通过与ZEB1启动子区域结合的NF-kB p65形成转录复合体来促进ZEB1的转录。反过来，ZEB1与MUC1-C形成ZEB1/MUC1-C复合体，抑制上皮分化诱导剂miR-200C的转录。ZEB1和MUC1-C的协同作用最终导致EMT。在肾癌中，SNAI2促进MUC1的表达，反过来，MUC1-C和b-catenin复合体通过与SNAI2启动子区域相互作用诱导细胞的EMT而增加SNAI2的转录活性。ALKBH2通过抑制E-catenin和通过MUC1增加vimentin的表达来促进膀胱癌细胞的EMT。MUC1与癌细胞凋亡细胞凋亡是一种受基因控制的正常细胞死亡，在细胞对环境的适应和维持动态平衡方面发挥着重要作用。MUC1可抑制由凋亡物质、化疗药物和雌激素诱导的细胞凋亡(图4)。图4. MUC1抑制由凋亡物质、化疗药物和雌激素诱导的细胞凋亡死亡受体超家族的激活诱导了caspase-8的激活，从而引发了一种凋亡反应。MUC1-CD通过直接与caspase-8 p18片段结合并阻止caspase-8募集到死亡诱导信号复合体来抑制细胞凋亡。在化疗药物应激条件下，miR-551b通过抑制过氧化氢酶的表达导致细胞内ROS积聚。累积的ROS促进MUC1的过度表达，而MUC1促进EGFR介导的涉及Akt/c-Flip/COX-2的细胞生存级联的激活并抑制细胞凋亡。此外，MUC1通过激活HCT116中的JNK1抑制顺铂诱导的细胞凋亡。MUC1和STAT1之间的相互作用通过JAK/STAT信号通路驱动IFITM1在芳香酶抑制剂耐药的乳腺癌细胞中过表达，并抑制雌激素诱导的细胞凋亡。MUC1与肿瘤干细胞肿瘤干细胞(CSCs)是肿瘤细胞中具有自我更新能力的一组细胞，被认为是致癌、促进肿瘤进展、肿瘤转移和癌症复发的原因。MUC1-C直接与MYC结合并驱动BRN2、Yamanaka OSKM(OCT4、SOX2、KLF4和MYC)多能因子的激活和神经内分泌(NE)去分化(图5)。图5. MUC1与肿瘤干细胞MUC1-C直接与E2F1结合，激活esBAF复合体(BRG1、ARID1A、BAF60a、BAF155和BAF170)，驱动NOTCH1、NANOG和CSC自我更新。MUC1-C整合了神经内分泌前列腺癌(NEPC)中的MYC和E2F1信号通路。MUC1-C/E2F1/esBAF/ARID1A通路可诱导EMT及NOTCH1、NANOG和MYC的表达。MUC1-C/E2F1/PBAF/PBRM1途径诱导NRF2介导的氧化还原平衡以及OSKM和NANOG的表达。MUC1-C还在PBRM1激活、氧化还原动态平衡、活性氧水平和CSC状态的相互作用中起着关键作用。MUC1与DNA甲基化MUC1和DNA甲基化过程之间有错综复杂的联系。一方面，MUC1可以调节基因甲基化。研究发现发现MUC1-C通过与DNMT1和DNMT3b启动子区域结合来调节DNA甲基化。此外，研究也发现MUC1降低了胃癌细胞中TFF2的甲基化，进而增加了TFF2的表达，并与预后相关。MUC1与肿瘤耐药研究发现，MUC1-CD不仅参与了多药耐药的形成，而且促进了多药耐药(MDR)基因的表达。沉默MUC1的癌细胞可使其对曲妥珠单抗、顺铂和tamoxifen敏感。长期使用曲妥珠单抗会导致对曲妥珠单抗敏感的乳腺细胞中FN、EGF和IL-6上调，促进STAT3的过度激活，从而促进MUC1和MUC4的表达，并通过维持HER2的持续激活最终导致对曲妥珠单抗的抗药性。沉默MUC1-C通过下调HER2激活逆转乳腺癌细胞对曲妥珠单抗的耐药性。Namba等人使用KL-6/MUC1的单抗隔离MUC1，逆转了乳腺癌细胞对曲妥珠单抗介导的耐药性。Keisuke Shigeta等人的研究发现，在顺铂耐药的尿路上皮细胞系中，MUC1-C高表达，并伴有PI3K-AKT-mTOR信号通路和MDR1表达上调。MUC1下调后，PI3K-AKT mTOR信号通路和MDR1水平均降低，对顺铂的敏感性显著提高。这表明MUC1-C通过PI3K-AKTmTOR信号通路激活MDR1，导致尿路上皮癌细胞耐药。MUC1-C在Rab31的启动子上与ERa形成复合体，从而减少了tamoxifen对ERa的占据，最终导致对tamoxifen的耐药性。沉默MUC1-C导致pHER2下调，并恢复tamoxifen的敏感活性。以MUC1为基础的抗肿瘤治疗基于MUC1的治疗主要包括单抗、ADC、肿瘤疫苗、适配子，其中一些已经进入临床实验（图6）。图6. 基于MUC1药物的临床试验单抗以往针对MUC1的单抗治疗主要针对MUC1-N，但在治疗肿瘤方面效果不佳。研究人员目前正在开发针对MUC1-C和MUC1糖基的下一代单抗。Kim等人通过噬菌体展示技术分离出针对MUC1-C的抗体。后续实验证实，SKM1-02、-13和-20抗体显著抑制TNBC细胞的侵袭，SKM1-02显著抑制细胞生长。Naito等人以MUC1糖肽库为基础，设计合成了两种新型的MUC1单抗(1B2和12D10)。1B2和12D10都识别MUC1肽的PDT*R基序上的糖链。1B2识别GalNAc上O6位的O-糖链，而12D10识别相同位置的Neu5Ac。ADC基于MUC1的ADC的靶点包括MUC1蛋白骨架(MUC1-C、MUC1-N)和MUC1糖基相关蛋白。Wu等人开发了一种人源化MUC1抗体(HzMUC1)，它只识别肿瘤细胞表面的MUC1。ADC由HzMUC1与MMAE偶联而成。HzMUC1 MMAE通过诱导G2/M细胞周期停滞和促进细胞凋亡来抑制曲妥珠单抗耐药和HER2阳性乳腺癌细胞生长。Panchamoorthy等人研制了基于MUC1-C的3D1-MMAE ADC药物，并在体外实验中验证了其对MUC1-C阳性肿瘤细胞的杀伤作用。除了在MUC1蛋白骨架上发挥作用的ADC外，MUC1糖基化相关蛋白也是ADC的靶标。例如，SAR566658通过识别MUC1相关的唾液酸糖蛋白CA6来诱导肿瘤细胞死亡，并且在动物肿瘤模型中观察到SAR566658的有效剂量与CA6的表达相关。GSTA是一种特异性糖基化新抗原肽，位于MUC1异常糖基化的串联重复序列区域。MUC1 ADC的通过将GSTA新抗原特异性16A抗体与MMAE偶联来诱导细胞杀伤。研究发现16A-MMAE以剂量依赖的方式抑制肿瘤生长，并且在表达人MUC1的转基因小鼠中不会产生显著的毒性。适配子适配子是具有高度特异性和亲和力的单链DNA、RNA寡核苷酸或具有三维结构的多肽。适配子可以与多种分子结合，包括纳米粒子、两亲性物质、药物等。Hanafi-Bojd开发了一种与二氧化硅纳米颗粒相结合的MUC1适配子，以有效地靶向乳腺癌细胞。Vivo-Llorca等人进一步表明，MUC1适配子包裹的二氧化硅纳米颗粒可以靶向Navitoclax耐药的TNBC细胞并诱导凋亡。Tan L等人的研究以MUC1适配子(APT)为载体，将阿霉素(DOX)导入表达MUC1的乳腺癌细胞(MCF7)。研究发现与游离DOX相比，APT-DOX复合体在不降低对靶细胞的细胞毒性的情况下，将巨噬细胞的存活率提高了近6倍。Khanet等人开发并验证了一种DNA适配子，它能特异性识别剪接变异体MUC1/Y，该剪接变异体在体内抑制乳腺癌细胞的生长。肿瘤疫苗与正常表型相比，恶性表型癌细胞的MUC1糖基化显著改变，肿瘤相关的O-糖链可作为肿瘤疫苗设计的靶点。Bilusic等人研制的基于多靶点的Ad5PSA/MUC-1/Brachyury重组免疫治疗疫苗。对于转移性去势抵抗前列腺癌(MCRPC)的患者，已经完成了I期临床试验，该疫苗耐受性良好。Wu等人开发了一种基于MUC1保护性抗原决定簇的Qβ-MUC1偶联疫苗，对乳腺癌细胞具有显著的选择性，克服了免疫耐受的缺陷。Liu等人构建的纳米颗粒能够将MUC1 mRNA疫苗运送到淋巴结中的树突状细胞(DC)，以激活和放大肿瘤特异性T细胞。mRNA疫苗联合CTLA-4单抗可显著增强机体免疫应答，有效抑制TNBC细胞生长。小编小结MUC1是一种高度糖基化的I型跨膜蛋白，在上皮细胞的管腔表面形成一种保护性屏障。MUC1在肿瘤细胞中高表达，其可通过调节肿瘤细胞代谢、EMT、抑制肿瘤细胞凋亡等方面促进肿瘤进展、增强肿瘤耐药性。因此，MUC1可能成为未来肿瘤靶向治疗的新靶点。目前针对MUC1的疫苗、抗体、ADC适配子正在开发中，一些处于I/II期临床试验，并已经显示出显著的治疗效果。尽管取得了这些进展，MUC1的具体作用机制仍然有待进一步探索。参考文献1.MUC1: An emerging target in cancer treatment and diagnosis.2.MUC1: structure, function, and clinic application in epithelial cancers.

抗体疫苗抗体药物偶联物信使RNA小分子药物