Seven years ago, Daniel Ives believed that he was on the cusp of solving aging. He wanted to continue working on a discovery he made as a graduate student at the University of Cambridge, but couldn’t get support to continue the research as a postdoc. So he decided to go it alone.
“I just spent money out of my own bank account on life science experiments, which are incredibly expensive, and you run out of money very quickly, so I roped in family,” Ives told
Endpoints News
in an interview. “I got a few donations, and eventually I asked my girlfriend, ‘Will you give me your life savings for the next experiment?’”
She said “no” and told Ives to talk to real investors. It was good advice. Since then, Ives has raised $18 million for his startup Shift Bioscience, including a newly disclosed $16 million seed funding, he told Endpoints exclusively.
BGF, a firm that invests in British and Irish companies, led the funding. Returning investors include F-Prime Capital, Kindred Capital and Jonathan Milner, the founder and former CEO of Abcam.
Shift Bio is set on finding drugs that rewind the epigenetic clock. The clock is a tool to estimate a person’s age by looking at chemical markers on their DNA, and many scientists in the anti-aging field believe that reversing the clock is a prerequisite for improving healthy longevity.
The startup’s early work shows just how much stock researchers put in the clock. Ives was initially focused on mitochondria, the power plants of the cell. They can accumulate mutations with age, hindering their energy output yet causing them to replicate faster like cancer.
Ives found a way to help healthy mitochondria flourish and outcompete renegade ones in rapidly aging mice. The treatment relieved some of their symptoms, and the mice looked younger, but their epigenetic clocks didn’t budge. After repeating the experiment in naturally aged animals, with similarly disappointing results, Ives ditched the approach.
“If we’re really going to translate this to people for physiological aging, for you and me, not just some mouse, we’ve got to make sure this clock moves,” Ives said. “Once we’ve got that, we can pair it with functional data.”
The failure inspired him to pursue an even bigger goal: to find genes that control the epigenetic clock and use them to reverse aging.
Researchers have been rewinding the epigenetic clock in a petri dish for nearly two decades, but finding a way to do it in humans is proving challenging.
A cocktail of four proteins called Yamanaka factors can turn a cell from an adult — even a centenarian — into a stem cell with an epigenetic age of zero. The blank slate cell can be turned into other useful cells in the lab. But when this process is replicated directly in a mouse, the animals develop tumors composed of a potpourri of tissues.
“It’s like a body without a body plan,” Ives said. “It’s clearly something very dangerous from a therapeutic perspective.” At Shift Bio, he is trying to find ways to rejuvenate cells, making them healthy and spry, without causing them to lose their identities. “We want to rewind the clock, but we don’t want to rewind development,” he said.
To do that, his startup collected cells with as many epigenetic ages as he could find. The company used single-cell RNA sequencing to record which genes are turned on in the cells and methylome sequencing to look at their epigenetic markers. Machine learning helped them connect the two datasets and predict age based on gene expression.
Shift Bio has also used the data to develop an AI cell simulation, allowing its researchers to probe different genes on a computer and predict how they affect the clock before committing to lab experiments. It’s helped the company discover six new ways of rejuvenating cells, none of which involve the four Yamanaka factors, Ives said. He won’t name the genes involved, but said one of the approaches seemed so simple that he was shocked that someone else hadn’t already discovered it.
“These simulations are like a new telescope on biology and allow us to explore combinatorial space, and we’re able to find things for the first time,” Ives said.
Ives plans to use the new funding to make sure that the rejuvenation approaches it found are broadly applicable to many cells in the body, which is vital for a “disease-agnostic approach.”
The startup has recently grown from just eight employees to nearly 20, and a big focus of the new team will be thinking about how to turn some of its discoveries into medicines. The genes that the startup has identified so far are all transcription factors, which are notoriously difficult starting points for drug discovery.
Shift Bio will face competition. Another startup, clock.bio, recently said it had
discovered 140 genes vital to cell rejuvenation
. Shift’s biggest competitor, Altos Labs,
launched with $3 billion
in early 2022 and a star-studded scientific team that included Steve Horvath, the biologist who discovered the epigenetic clock, and his collaborator Ken Raj, who was trying to understand the biological basis of the clock.
But Ives is undaunted and feels that the well-funded and secretive Altos only helps his cause. “By attracting all that credibility to the field, it became easier for us to attract investors,” he said. “It’s such a long road, the risks are so high, it’s going to be amazing if anybody pulls this off.”