Chlorine is the principal microbial disinfectant used for water treatment. However, chlorine-resistant bacteria such as Mycobacterium spp., can survive chlorine treatment and even grow in the presence of chlorine, posing potential public health risks. In this study, we isolated a Mycobacterium sp. strain from treated effluent and investigated its chlorine resistance and recovery using transcriptomic analyses. Specifically, isolate M1, showing 94.58 % average nucleotide identity (ANI) with Mycobacterium massilipolynesiensis type genome, was exposed to 1 ppm HOCl for 30 min and subjected to RNA sequencing. Genes identified as upregulated compared to control conditions (no HOCl) were involved in detoxification (toxic compound degradation; nemA; log2 fold-change [FC]: 7.41), redox homeostasis (COQ5; quinone synthesis; log2 FC 5.70, rosB; riboflavin synthesis; log2 FC 5.61), protein homeostasis (cysHKO, moeZ cysteine biosynthesis, and arg complex; arginine metabolism), and lipid metabolism (cpnA; 6.95 FC) suggesting a multifaceted adaptation to oxidative stress. Levels of a few membrane transport proteins (czcD, and bcr) were also upregulated, highlighting their role in chlorine exposure. Overall, this study broadens the understanding of chlorine resistance strategies employed by Mycobacterium sp. to combat oxidative stress and the resulting toxic intracellular compounds, and has implications for adjusting water treatment technologies toward eliminating mycobacteria.